tag:blogger.com,1999:blog-9045240617730855574.post5759836985390061342..comments2023-08-11T04:03:10.057-07:00Comments on long time ago...: niceOverPlot, or when the number of dimensions does matterJavier Fernández-Lópezhttp://www.blogger.com/profile/04195699007682768268noreply@blogger.comBlogger14125tag:blogger.com,1999:blog-9045240617730855574.post-85156241406492457052023-07-10T07:53:27.273-07:002023-07-10T07:53:27.273-07:00Hi Javi, I am doing my TFG, but I got stuck in the...Hi Javi, I am doing my TFG, but I got stuck in the same error as the colleague who could not find the function "niceOverPlot". I clicked on the drive link but I get the message that I must give permission. I dont know if you could grant me such permission. Your blog has been very very useful. Thank you very much!Nicolás Echarren Lucendohttps://www.blogger.com/profile/07990133763818100225noreply@blogger.comtag:blogger.com,1999:blog-9045240617730855574.post-40294117564115510932022-02-28T11:15:38.107-08:002022-02-28T11:15:38.107-08:00Este comentario ha sido eliminado por un administrador del blog.abbezaffinohttps://www.blogger.com/profile/06645760554237022567noreply@blogger.comtag:blogger.com,1999:blog-9045240617730855574.post-63193730192617358162021-01-26T16:46:10.361-08:002021-01-26T16:46:10.361-08:00Hi, you have first to download the function, load ...Hi, you have first to download the function, load it and then proceed with the script. He function can be found here: https://drive.google.com/open?id=0BzwZKMfGd8jvVXRvTUUtbU1HNEEJavier Fernández-Lópezhttps://www.blogger.com/profile/04195699007682768268noreply@blogger.comtag:blogger.com,1999:blog-9045240617730855574.post-40324940747479716892021-01-16T12:10:28.927-08:002021-01-16T12:10:28.927-08:00I am having the same problem which I can not chang...I am having the same problem which I can not change the color of the contour line. I wonder did you solved the problem?cem1907https://www.blogger.com/profile/11244489869150885894noreply@blogger.comtag:blogger.com,1999:blog-9045240617730855574.post-63694544004982503332020-09-04T09:02:27.729-07:002020-09-04T09:02:27.729-07:00Can you helpme?. I have a problem when plot it
>...Can you helpme?. I have a problem when plot it<br />> niceOverPlot(pca_bio, n1=262 , n2= 115)<br />Error in niceOverPlot(pca_bio, n1 = 262, n2 = 115) :<br />no se pudo encontrar la función "niceOverPlot"Anonymoushttps://www.blogger.com/profile/09218383237606607339noreply@blogger.comtag:blogger.com,1999:blog-9045240617730855574.post-72726922628679890742020-09-04T09:02:03.010-07:002020-09-04T09:02:03.010-07:00Can you helpme?. I have a problem when plot it
>...Can you helpme?. I have a problem when plot it<br />> niceOverPlot(pca_bio, n1=262 , n2= 115)<br />Error in niceOverPlot(pca_bio, n1 = 262, n2 = 115) :<br />no se pudo encontrar la función "niceOverPlot"Anonymoushttps://www.blogger.com/profile/09218383237606607339noreply@blogger.comtag:blogger.com,1999:blog-9045240617730855574.post-63785501048953075952020-09-03T19:55:32.422-07:002020-09-03T19:55:32.422-07:00Dear Javi,
congratulations for the plot, is reall...Dear Javi,<br /><br />congratulations for the plot, is really great. I have a problem when plot it<br />> niceOverPlot(pca_bio, n1=262 , n2= 115) <br />Error in niceOverPlot(pca_bio, n1 = 262, n2 = 115) : <br /> no se pudo encontrar la función "niceOverPlot"Anonymoushttps://www.blogger.com/profile/09218383237606607339noreply@blogger.comtag:blogger.com,1999:blog-9045240617730855574.post-71931609587746585322018-05-28T04:47:14.243-07:002018-05-28T04:47:14.243-07:00Dear Javi,
congratulations for the plot, is reall...Dear Javi,<br /><br />congratulations for the plot, is really great. I have a problem when ask about the number of axis. <br /><br />Please see:<br />> pca_Ph_Pl <-dudi.pca(na.omit(data_Ph_Pl, center = T, scale = T, scannf = F, nf = 2))<br />Select the number of axes: <br />2<br /><br />You can reproduce this result non-interactively with: <br />dudi.pca(df = na.omit(data_Ph_Pl, center = T, scale = T, scannf = F, nf = 2), scannf = FALSE, nf = 2)<br /><br />Please, can you help me?<br /><br />RegardsBuenohttps://www.blogger.com/profile/13058944313981261007noreply@blogger.comtag:blogger.com,1999:blog-9045240617730855574.post-1011004821906488442018-02-14T10:37:53.767-08:002018-02-14T10:37:53.767-08:00Wonderful plot! I have been using this to describe...Wonderful plot! I have been using this to describe plant species I am studying. However, I cannot get the contour line colors to change. Do you have any suggestion for changing the color? Anonymoushttps://www.blogger.com/profile/01180342355967964685noreply@blogger.comtag:blogger.com,1999:blog-9045240617730855574.post-53558175065234107092017-05-16T01:21:27.420-07:002017-05-16T01:21:27.420-07:00Hi!
It would be really cool! Actually, we were t...Hi! <br /> It would be really cool! Actually, we were thinking about that, but we decided first to publish this first version of the function... please, let us know when the edition is ready! Our next steps would need this >2 species plot!<br /><br /> Cheers!Javier Fernández-Lópezhttps://www.blogger.com/profile/04195699007682768268noreply@blogger.comtag:blogger.com,1999:blog-9045240617730855574.post-91710523039312065252017-05-16T01:18:13.409-07:002017-05-16T01:18:13.409-07:00Thanks!
Cheers!Thanks! <br /><br /> Cheers!Javier Fernández-Lópezhttps://www.blogger.com/profile/04195699007682768268noreply@blogger.comtag:blogger.com,1999:blog-9045240617730855574.post-6450029214170865022017-05-15T02:55:36.309-07:002017-05-15T02:55:36.309-07:00Hi,
Nice post, thanks for sharing! I think I'...Hi,<br />Nice post, thanks for sharing! I think I'm going to look into editing the code for >2 taxaAnonymoushttps://www.blogger.com/profile/11164609942572279728noreply@blogger.comtag:blogger.com,1999:blog-9045240617730855574.post-78153172641489222612017-05-11T02:55:50.297-07:002017-05-11T02:55:50.297-07:00Hi Ido!
Yeah, it would be cool! Currently the fu...Hi Ido!<br /><br /> Yeah, it would be cool! Currently the function is prepared to plot only two "species" (or groups), but it could be modified...! You could also use other traits as morphological characters in order to built PCA axes...<br /> Cheers!Javier Fernández-Lópezhttps://www.blogger.com/profile/04195699007682768268noreply@blogger.comtag:blogger.com,1999:blog-9045240617730855574.post-78574581571353702942017-05-10T10:44:23.741-07:002017-05-10T10:44:23.741-07:00Nice blog post, I wonder if this could be done for...Nice blog post, I wonder if this could be done for bacterial "species" from environmental samples where you would have a large number of species. Ido Hatamhttps://www.blogger.com/profile/10298610100522322969noreply@blogger.com